sped up realign

[mothur.git] / chimerarealigner.h

diff --git a/chimerarealigner.h b/chimerarealigner.h
index dec41ef716eb9bcd35864bb461ade028786b2133..7ad741800e3b571f4c3b63dd8349bcf2e9e21e47 100644 (file)
--- a/chimerarealigner.h
+++ b/chimerarealigner.h
@@ -18,17 +18,15 @@
 class ChimeraReAligner  {
        
        public:
-               ChimeraReAligner(vector<Sequence*>, int, int);   
+               ChimeraReAligner();      
                ~ChimeraReAligner();
                
                void reAlign(Sequence*, vector<results>);
                                
        private:
                Sequence* querySeq;
-               vector<Sequence*> templateSeqs;
-               int match, misMatch;
                
-               Sequence* getSequence(string);  //find sequence from name
+               //Sequence* getSequence(string);  //find sequence from name
                MothurOut* m;
 };
 /***********************************************************/