modified calculators to use doubles, added numotu and fontsize parameters to heatmap...

[mothur.git] / chimerapintailcommand.cpp

diff --git a/chimerapintailcommand.cpp b/chimerapintailcommand.cpp
index 5818ab22c0bfc3e0245372de038e4c43d95a2289..fd8724dc2f2908d3eebebb995e5ef22e697cfd5e 100644 (file)
--- a/chimerapintailcommand.cpp
+++ b/chimerapintailcommand.cpp
@@ -83,14 +83,6 @@ ChimeraPintailCommand::ChimeraPintailCommand(string option)  {
                                        int ableToOpen;
                                        ifstream in;
                                        
-                                       #ifdef USE_MPI  
-                                               int pid;
-                                               MPI_Comm_size(MPI_COMM_WORLD, &processors); //set processors to the number of mpi processes running
-                                               MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are
-                               
-                                               if (pid == 0) {
-                                       #endif
-
                                        ableToOpen = openInputFile(fastaFileNames[i], in, "noerror");
                                
                                        //if you can't open it, try default location
@@ -104,17 +96,6 @@ ChimeraPintailCommand::ChimeraPintailCommand(string option)  {
                                        }
                                        in.close();
                                        
-                                       #ifdef USE_MPI  
-                                                       for (int j = 1; j < processors; j++) {
-                                                               MPI_Send(&ableToOpen, 1, MPI_INT, j, 2001, MPI_COMM_WORLD); 
-                                                       }
-                                               }else{
-                                                       MPI_Status status;
-                                                       MPI_Recv(&ableToOpen, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD, &status);
-                                               }
-                                               
-                                       #endif
-
                                        if (ableToOpen == 1) { 
                                                m->mothurOut("Unable to open " + fastaFileNames[i] + ". It will be disregarded."); m->mothurOutEndLine(); 
                                                //erase from file list