some bug fixes

[mothur.git] / chimerapintailcommand.cpp

diff --git a/chimerapintailcommand.cpp b/chimerapintailcommand.cpp
index fa7fd170fb15cd4f224df0094b139dd24c93c88d..f11e1cafe9b330aebd0edd1d12611255daebbf42 100644 (file)
--- a/chimerapintailcommand.cpp
+++ b/chimerapintailcommand.cpp
@@ -27,7 +27,7 @@ ChimeraPintailCommand::ChimeraPintailCommand(string option)  {
                        OptionParser parser(option);
                        map<string,string> parameters = parser.getParameters();
                        
-                       ValidParameters validParameter;
+                       ValidParameters validParameter("chimera.pintail");
                        map<string,string>::iterator it;
                        
                        //check to make sure all parameters are valid for command
@@ -276,7 +276,7 @@ int ChimeraPintailCommand::execute(){
                #ifdef USE_MPI
                        int pid, end, numSeqsPerProcessor; 
                                int tag = 2001;
-                               vector<long> MPIPos;
+                               vector<unsigned long int> MPIPos;
                                
                                MPI_Status status; 
                                MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are
@@ -523,7 +523,7 @@ int ChimeraPintailCommand::driver(linePair* line, string outputFName, string fil
 }
 //**********************************************************************************************************************
 #ifdef USE_MPI
-int ChimeraPintailCommand::driverMPI(int start, int num, MPI_File& inMPI, MPI_File& outMPI, MPI_File& outAccMPI, vector<long>& MPIPos){
+int ChimeraPintailCommand::driverMPI(int start, int num, MPI_File& inMPI, MPI_File& outMPI, MPI_File& outAccMPI, vector<unsigned long int>& MPIPos){
        try {
                                
                MPI_Status status;