started work on sffinfo command. fixed bug across all paralellized commands if the...

[mothur.git] / chimerapintailcommand.cpp

diff --git a/chimerapintailcommand.cpp b/chimerapintailcommand.cpp
index 6cf581b9308f21159186ece928bcbdf8e4142803..8dffd3a222565f39f6b029e96ce65afd6c47a4e4 100644 (file)
--- a/chimerapintailcommand.cpp
+++ b/chimerapintailcommand.cpp
@@ -359,7 +359,7 @@ int ChimeraPintailCommand::execute(){
                                        }
                                        
                                }else{
-                                       vector<int> positions;
+                                       vector<unsigned long int> positions;
                                        processIDS.resize(0);
                                        
                                        ifstream inFASTA;
@@ -369,7 +369,7 @@ int ChimeraPintailCommand::execute(){
                                        while(!inFASTA.eof()){
                                                input = getline(inFASTA);
                                                if (input.length() != 0) {
-                                                       if(input[0] == '>'){    long int pos = inFASTA.tellg(); positions.push_back(pos - input.length() - 1);  }
+                                                       if(input[0] == '>'){    unsigned long int pos = inFASTA.tellg(); positions.push_back(pos - input.length() - 1); }
                                                }
                                        }
                                        inFASTA.close();
@@ -379,7 +379,7 @@ int ChimeraPintailCommand::execute(){
                                        int numSeqsPerProcessor = numSeqs / processors;
                                        
                                        for (int i = 0; i < processors; i++) {
-                                               long int startPos = positions[ i * numSeqsPerProcessor ];
+                                               unsigned long int startPos = positions[ i * numSeqsPerProcessor ];
                                                if(i == processors - 1){
                                                        numSeqsPerProcessor = numSeqs - i * numSeqsPerProcessor;
                                                }