added mothurOutJustToScreen function and changed all counter outputs to use it.

[mothur.git] / chimeraperseuscommand.cpp

diff --git a/chimeraperseuscommand.cpp b/chimeraperseuscommand.cpp
index f7dc597cf8ca514712bf06f29f2010982d6c03c9..fd94fcab7e289590da462eef7f03fc7069ab551f 100644 (file)
--- a/chimeraperseuscommand.cpp
+++ b/chimeraperseuscommand.cpp
@@ -1046,10 +1046,10 @@ int ChimeraPerseusCommand::driver(string chimeraFileName, vector<seqData>& seque
                        }
        
                        //report progress
-                       if((i+1) % 100 == 0){   m->mothurOut("Processing sequence: " + toString(i+1) + "\n");           }
+                       if((i+1) % 100 == 0){   m->mothurOutJustToScreen("Processing sequence: " + toString(i+1) + "\n");               }
                }
                
-               if((numSeqs) % 100 != 0){       m->mothurOut("Processing sequence: " + toString(numSeqs) + "\n");               }
+               if((numSeqs) % 100 != 0){       m->mothurOutJustToScreen("Processing sequence: " + toString(numSeqs) + "\n");           }
                
                chimeraFile.close();
                accnosFile.close();