added checks to make sure windows processes completed their tasks.

[mothur.git] / chimeraperseuscommand.cpp

diff --git a/chimeraperseuscommand.cpp b/chimeraperseuscommand.cpp
index b4e478caea6bab2c3cf3a7d13a756f95a29f2223..66889f145af3340d5a7fe38db4e8aa34997c2219 100644 (file)
--- a/chimeraperseuscommand.cpp
+++ b/chimeraperseuscommand.cpp
@@ -1076,6 +1076,9 @@ int ChimeraPerseusCommand::createProcessesGroups(string outputFName, string accn
                        
                //Close all thread handles and free memory allocations.
                for(int i=0; i < pDataArray.size(); i++){
+            if (pDataArray[i]->count != pDataArray[i]->end) {
+                m->mothurOut("[ERROR]: process " + toString(i) + " only processed " + toString(pDataArray[i]->count) + " of " + toString(pDataArray[i]->end) + " sequences assigned to it, quitting. \n"); m->control_pressed = true; 
+            }
                        num += pDataArray[i]->count;
                        CloseHandle(hThreadArray[i]);
                        delete pDataArray[i];