Changes to seq.error so that an alignment is not necessary

[mothur.git] / chimeraperseuscommand.cpp

diff --git a/chimeraperseuscommand.cpp b/chimeraperseuscommand.cpp
index e1ad14ecccda1e5208d03809db7539a12f4a2904..1e5f9d41b91d52d1f8b791ad82be5cffd7e28b6c 100644 (file)
--- a/chimeraperseuscommand.cpp
+++ b/chimeraperseuscommand.cpp
@@ -911,8 +911,8 @@ int ChimeraPerseusCommand::driver(string chimeraFileName, vector<seqData>& seque
                                        type = "chimera";
                                        chimeraRefSeq = myPerseus.stitchBimera(alignments, leftParentBi, rightParentBi, breakPointBi, leftMaps, rightMaps);
                                }
-                               ;
-                               if (m->control_pressed) { chimeraFile.close(); m->mothurRemove(chimeraFileName); accnosFile.close(); m->mothurRemove(accnosFileName); return 0; }
+
+                if (m->control_pressed) { chimeraFile.close(); m->mothurRemove(chimeraFileName); accnosFile.close(); m->mothurRemove(accnosFileName); return 0; }
                                
                                double chimeraDist = myPerseus.modeledPairwiseAlignSeqs(sequences[i].sequence, chimeraRefSeq, dummyA, dummyB, correctModel);