a few changes to chimera classes

[mothur.git] / chimeracheckrdp.cpp

diff --git a/chimeracheckrdp.cpp b/chimeracheckrdp.cpp
index f9b2319a0dfc489c41d1634c2e4519e3db73bdc2..dcd2ef34ddadc26dc2574b8d6d903454e417aa36 100644 (file)
--- a/chimeracheckrdp.cpp
+++ b/chimeracheckrdp.cpp
@@ -43,7 +43,7 @@ void ChimeraCheckRDP::print(ostream& out) {
                                        out << IS[i][k].score << '\t'; 
                                        //if (IS[i][k].score > chimeraCutoff) {  isChimeric[i] = true;   lastChimericWindowFound = k;           }                       
                                }
-                               
+                               out << endl;
                                //if (isChimeric[i]) { 
                                        //mothurOut(querySeqs[i]->getName() + "\tIS: " + toString(IS[i][lastChimericWindowFound].score) + "\tbreakpoint: " + toString(IS[i][lastChimericWindowFound].midpoint) + "\tleft parent: " + IS[i][lastChimericWindowFound].leftParent + "\tright parent: " + IS[i][lastChimericWindowFound].rightParent); mothurOutEndLine();
                                        //out << endl << "chimera: YES" << endl;
@@ -65,6 +65,7 @@ void ChimeraCheckRDP::print(ostream& out) {
                                }
                }
                
+               mothurOut("This method does not determine if a sequence is chimeric, but allows you to make that determination based on the IS values."); mothurOutEndLine();
        }
        catch(exception& e) {
                errorOut(e, "ChimeraCheckRDP", "print");