added checks for ^C to quit command instead of program

[mothur.git] / chimeracheckrdp.cpp

diff --git a/chimeracheckrdp.cpp b/chimeracheckrdp.cpp
index 3e6dacdee85dbb75fb9b6535f259eead8a4f2509..790d3ebe01100c1d615be9d189e73d6fa03f28ef 100644 (file)
--- a/chimeracheckrdp.cpp
+++ b/chimeracheckrdp.cpp
@@ -24,7 +24,7 @@ ChimeraCheckRDP::~ChimeraCheckRDP() {
        }
 }      
 //***************************************************************************************************************
-void ChimeraCheckRDP::print(ostream& out, ostream& outAcc) {
+int ChimeraCheckRDP::print(ostream& out, ostream& outAcc) {
        try {
                
                m->mothurOut("Processing: " + querySeq->getName()); m->mothurOutEndLine();
@@ -48,6 +48,8 @@ void ChimeraCheckRDP::print(ostream& out, ostream& outAcc) {
                                makeSVGpic(IS);  //zeros out negative results
                        }
                }
+               
+               return 0;
        }
        catch(exception& e) {
                m->errorOut(e, "ChimeraCheckRDP", "print");
@@ -55,7 +57,7 @@ void ChimeraCheckRDP::print(ostream& out, ostream& outAcc) {
        }
 }
 //***************************************************************************************************************
-void ChimeraCheckRDP::doPrep() {
+int ChimeraCheckRDP::doPrep() {
        try {
                templateDB = new AlignmentDB(templateFileName, "kmer", kmerSize, 0.0,0.0,0.0,0.0);
                m->mothurOutEndLine();
@@ -65,6 +67,8 @@ void ChimeraCheckRDP::doPrep() {
                if (name != "") { 
                        readName(name);  //fills name map with names of seqs the user wants to have .svg for.  
                }
+               
+               return 0;
        }
        catch(exception& e) {
                m->errorOut(e, "ChimeraCheckRDP", "doPrep");