moved utilities out of mothur.h and into mothurOut class.

[mothur.git] / chimeracheckrdp.cpp

diff --git a/chimeracheckrdp.cpp b/chimeracheckrdp.cpp
index e89277b12078c089688c9c1cba7f9abe734ea8bc..1840c382627f8a65ff9849919b5f95de4cf60db0 100644 (file)
--- a/chimeracheckrdp.cpp
+++ b/chimeracheckrdp.cpp
@@ -283,7 +283,7 @@ void ChimeraCheckRDP::readName(string namefile) {
                delete buffer;
                
                while(!iss.eof()) {
-                       iss >> name; gobble(iss);
+                       iss >> name; m->gobble(iss);
                        names[name] = name;
                }
        
@@ -292,10 +292,10 @@ void ChimeraCheckRDP::readName(string namefile) {
        #else   
        
                ifstream in;
-               openInputFile(namefile, in);
+               m->openInputFile(namefile, in);
                                
                while (!in.eof()) {
-                       in >> name; gobble(in);
+                       in >> name; m->gobble(in);
                        names[name] = name;
                }
                in.close();
@@ -432,7 +432,7 @@ void ChimeraCheckRDP::makeSVGpic(vector<sim> info) {
                
                string file = outputDir + querySeq->getName() + ".chimeracheck.svg";
                ofstream outsvg;
-               openOutputFile(file, outsvg);
+               m->openOutputFile(file, outsvg);
                
                int width = (info.size()*5) + 150;