added sorted parameter to get.oturep, added error checking to chimera classes in...

[mothur.git] / chimeracheckrdp.cpp

diff --git a/chimeracheckrdp.cpp b/chimeracheckrdp.cpp
index dcd2ef34ddadc26dc2574b8d6d903454e417aa36..12785137232677e3a056a43fd31b705f9b618734 100644 (file)
--- a/chimeracheckrdp.cpp
+++ b/chimeracheckrdp.cpp
@@ -74,7 +74,7 @@ void ChimeraCheckRDP::print(ostream& out) {
 }
 
 //***************************************************************************************************************
-void ChimeraCheckRDP::getChimeras() {
+int ChimeraCheckRDP::getChimeras() {
        try {
                
                //read in query sequences and subject sequences
@@ -135,7 +135,7 @@ void ChimeraCheckRDP::getChimeras() {
                //free memory
                for (int i = 0; i < lines.size(); i++)                                  {       delete lines[i];        }
        
-                       
+               return 0;
        }
        catch(exception& e) {
                errorOut(e, "ChimeraCheckRDP", "getChimeras");