modified chimera commands to process multiple fasta files and added checks to pintail...

[mothur.git] / chimeracheckcommand.h

diff --git a/chimeracheckcommand.h b/chimeracheckcommand.h
index 6db61bd82cbfe30fd2b8c5d48e43f83b3df266b3..b3b49d30bad83f82d5c48b3cf1acf82f80ac766e 100644 (file)
--- a/chimeracheckcommand.h
+++ b/chimeracheckcommand.h
@@ -46,8 +46,10 @@ private:
        string fastafile, templatefile, namefile, outputDir;
        int processors, increment, ksize, numSeqs, templateSeqsLength;
        Chimera* chimera;
-       
-       
+       vector<string> fastaFileNames;
+       vector<string> nameFileNames;
+       vector<string> outputNames;
+               
 };
 
 /***********************************************************/