modified calculators to use doubles, added numotu and fontsize parameters to heatmap...

[mothur.git] / chimeracheckcommand.cpp

diff --git a/chimeracheckcommand.cpp b/chimeracheckcommand.cpp
index 264eb4c4ade8cfa2fd9f56246436b799ecb9d709..6cea5d5f9079701fdf58f1061cfe9836f1b93d3c 100644 (file)
--- a/chimeracheckcommand.cpp
+++ b/chimeracheckcommand.cpp
@@ -64,14 +64,6 @@ ChimeraCheckCommand::ChimeraCheckCommand(string option)  {
                                        int ableToOpen;
                                        ifstream in;
                                        
-                                       #ifdef USE_MPI  
-                                               int pid;
-                                               MPI_Comm_size(MPI_COMM_WORLD, &processors); //set processors to the number of mpi processes running
-                                               MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are
-                               
-                                               if (pid == 0) {
-                                       #endif
-
                                        ableToOpen = openInputFile(fastaFileNames[i], in, "noerror");
                                
                                        //if you can't open it, try default location
@@ -85,17 +77,6 @@ ChimeraCheckCommand::ChimeraCheckCommand(string option)  {
                                        }
                                        in.close();
                                        
-                                       #ifdef USE_MPI  
-                                                       for (int j = 1; j < processors; j++) {
-                                                               MPI_Send(&ableToOpen, 1, MPI_INT, j, 2001, MPI_COMM_WORLD); 
-                                                       }
-                                               }else{
-                                                       MPI_Status status;
-                                                       MPI_Recv(&ableToOpen, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD, &status);
-                                               }
-                                               
-                                       #endif
-
                                        if (ableToOpen == 1) { 
                                                m->mothurOut("Unable to open " + fastaFileNames[i] +". It will be disregarded."); m->mothurOutEndLine(); 
                                                //erase from file list
@@ -131,14 +112,6 @@ ChimeraCheckCommand::ChimeraCheckCommand(string option)  {
                                        int ableToOpen;
                                        ifstream in;
                                        
-                                       #ifdef USE_MPI  
-                                               int pid;
-                                               MPI_Comm_size(MPI_COMM_WORLD, &processors); //set processors to the number of mpi processes running
-                                               MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are
-                               
-                                               if (pid == 0) {
-                                       #endif
-
                                        ableToOpen = openInputFile(nameFileNames[i], in, "noerror");
                                
                                        //if you can't open it, try default location
@@ -152,17 +125,6 @@ ChimeraCheckCommand::ChimeraCheckCommand(string option)  {
                                        }
                                        in.close();
                                        
-                                       #ifdef USE_MPI  
-                                                       for (int j = 1; j < processors; j++) {
-                                                               MPI_Send(&ableToOpen, 1, MPI_INT, j, 2001, MPI_COMM_WORLD); 
-                                                       }
-                                               }else{
-                                                       MPI_Status status;
-                                                       MPI_Recv(&ableToOpen, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD, &status);
-                                               }
-                                               
-                                       #endif
-
                                        if (ableToOpen == 1) { 
                                                m->mothurOut("Unable to open " + nameFileNames[i] + ". It will be disregarded."); m->mothurOutEndLine(); 
                                                //erase from file list