changes while testing 1.26

[mothur.git] / chimeracheckcommand.cpp

diff --git a/chimeracheckcommand.cpp b/chimeracheckcommand.cpp
index 87f51e7c95c136403024c593e681a844ca18d006..6a4732cf72cd4222e539beb93c6b0b45226d2a08 100644 (file)
--- a/chimeracheckcommand.cpp
+++ b/chimeracheckcommand.cpp
@@ -551,6 +551,7 @@ int ChimeraCheckCommand::driver(linePair* filePos, string outputFName, string fi
                        
                        //report progress
                        if((count) % 100 == 0){ m->mothurOut("Processing sequence: " + toString(count)); m->mothurOutEndLine();         }
+            count++;
                }
                //report progress
                if((count) % 100 != 0){ m->mothurOut("Processing sequence: " + toString(count)); m->mothurOutEndLine();         }