int outMode=MPI_MODE_CREATE|MPI_MODE_WRONLY;
int inMode=MPI_MODE_RDONLY;
- char* outFilename = new char[outputFileName.length()];\r
- memcpy(outFilename, outputFileName.c_str(), outputFileName.length());
+ //char* outFilename = new char[outputFileName.length()];
+ //memcpy(outFilename, outputFileName.c_str(), outputFileName.length());
+
+ char outFilename[1024];
+ strcpy(outFilename, outputFileName.c_str());
- char* inFileName = new char[fastafile.length()];\r
- memcpy(inFileName, fastafile.c_str(), fastafile.length());
+ //char* inFileName = new char[fastafile.length()];
+ //memcpy(inFileName, fastafile.c_str(), fastafile.length());
+
+ char inFileName[1024];
+ strcpy(inFileName, fastafile.c_str());
MPI_File_open(MPI_COMM_WORLD, inFileName, inMode, MPI_INFO_NULL, &inMPI); //comm, filename, mode, info, filepointer
MPI_File_open(MPI_COMM_WORLD, outFilename, outMode, MPI_INFO_NULL, &outMPI);
- delete outFilename;
- delete inFileName;
+ //delete outFilename;
+ //delete inFileName;
if (m->control_pressed) { MPI_File_close(&inMPI); MPI_File_close(&outMPI); delete chimera; return 0; }