added save parameter to align.seqs, chimera commands, classify.seqs, and seq.error...

[mothur.git] / chimeraccodecommand.h

diff --git a/chimeraccodecommand.h b/chimeraccodecommand.h
index 2bf7a70fd159a93fcc813c3236aed97a8c18c916..87f5ee87f7df50625be6a7a6407070e73dfc5b8c 100644 (file)
--- a/chimeraccodecommand.h
+++ b/chimeraccodecommand.h
@@ -50,7 +50,7 @@ private:
        int driverMPI(int, int, MPI_File&, MPI_File&, MPI_File&, vector<unsigned long int>&);
        #endif
 
-       bool abort, filter;
+       bool abort, filter, save;
        string fastafile, templatefile, outputDir, maskfile;
        int processors, window, numwanted, numSeqs, templateSeqsLength;
        Chimera* chimera;