working on pam

[mothur.git] / chimeraccodecommand.h

diff --git a/chimeraccodecommand.h b/chimeraccodecommand.h
index 5b8092b6f7075111c7fa8c5c58caf14ef3ebaeca..52bf07d01f6a411b870e119f82ef97f7b6f45cbd 100644 (file)
--- a/chimeraccodecommand.h
+++ b/chimeraccodecommand.h
@@ -26,7 +26,9 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "chimera.ccode";               }
        string getCommandCategory()             { return "Sequence Processing"; }
+       
        string getHelpString(); 
+    string getOutputPattern(string);   
        string getCitation() { return "Gonzalez JM, Zimmermann J, Saiz-Jimenez C (2005). Evaluating putative chimeric sequences from PCR-amplified products. Bioinformatics 21: 333-7. \nhttp://www.mothur.org/wiki/Chimera.ccode"; }
        string getDescription()         { return "detect chimeric sequences"; }