modified chimera commands to process multiple fasta files and added checks to pintail...

[mothur.git] / chimeraccodecommand.h

diff --git a/chimeraccodecommand.h b/chimeraccodecommand.h
index 9a0efb951348b7f0a0f1bc511eb76facb21c6d9f..a07178e720ba59716c22d8d685624db2e3d83c0b 100644 (file)
--- a/chimeraccodecommand.h
+++ b/chimeraccodecommand.h
@@ -46,6 +46,8 @@ private:
        string fastafile, templatefile, outputDir, maskfile;
        int processors, window, numwanted, numSeqs, templateSeqsLength;
        Chimera* chimera;
+       vector<string> fastaFileNames;
+       vector<string> outputNames;
        
        
 };