added getCommandInfoCommand for gui

[mothur.git] / chimeraccodecommand.cpp

diff --git a/chimeraccodecommand.cpp b/chimeraccodecommand.cpp
index 0b6117a98efba24d95da9df73aa15062141a8cad..2586e2801d5071944b6acfa36cac330a9d26694e 100644 (file)
--- a/chimeraccodecommand.cpp
+++ b/chimeraccodecommand.cpp
@@ -52,7 +52,7 @@ string ChimeraCcodeCommand::getHelpString(){
                helpString += "The chimera.ccode command should be in the following format: \n";
                helpString += "chimera.ccode(fasta=yourFastaFile, reference=yourTemplate) \n";
                helpString += "Example: chimera.ccode(fasta=AD.align, reference=core_set_aligned.imputed.fasta) \n";
-               helpString += "Note: No spaces between parameter labels (i.e. fasta), '=' and parameters (i.e.yourFastaFile).\n\n";     
+               helpString += "Note: No spaces between parameter labels (i.e. fasta), '=' and parameters (i.e.yourFastaFile).\n";       
                return helpString;
        }
        catch(exception& e) {
@@ -287,7 +287,7 @@ int ChimeraCcodeCommand::execute(){
                                if (m->control_pressed) {  MPI_File_close(&inMPI);  MPI_File_close(&outMPI);   MPI_File_close(&outMPIAccnos);  for (int j = 0; j < outputNames.size(); j++) {   remove(outputNames[j].c_str()); } outputTypes.clear();  delete chimera; return 0;  }
                        
                                if (pid == 0) { //you are the root process 
-                                       string outTemp = "For full window mapping info refer to " + mapInfo + "\n\n";
+                                       string outTemp = "For full window mapping info refer to " + mapInfo + "\n";
                                        
                                        //print header
                                        int length = outTemp.length();