moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / chimerabellerophoncommand.h

diff --git a/chimerabellerophoncommand.h b/chimerabellerophoncommand.h
deleted file mode 100644 (file)
index b759d5a..0000000
--- a/chimerabellerophoncommand.h
+++ /dev/null
@@ -1,51 +0,0 @@
-#ifndef CHIMERABELLEROPHONCOMMAND_H
-#define CHIMERABELLEROPHONCOMMAND_H
-
-/*
- *  chimerabellerophoncommand.h
- *  Mothur
- *
- *  Created by westcott on 4/1/10.
- *  Copyright 2010 Schloss Lab. All rights reserved.
- *
- */
-
-#include "mothur.h"
-#include "command.hpp"
-#include "chimera.h"
-
-
-/***********************************************************/
-
-class ChimeraBellerophonCommand : public Command {
-public:
-       ChimeraBellerophonCommand(string);
-       ChimeraBellerophonCommand();
-       ~ChimeraBellerophonCommand(){}
-       
-       vector<string> setParameters();
-       string getCommandName()                 { return "chimera.bellerophon"; }
-       string getCommandCategory()             { return "Sequence Processing"; }
-       string getHelpString(); 
-       string getCitation() { return "Huber T, Faulkner G, Hugenholtz P (2004). Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20: 2317-9. \nhttp://www.mothur.org/wiki/Chimera.bellerophon"; }
-       string getDescription()         { return "detect chimeric sequences"; }
-       
-       int execute(); 
-       void help() { m->mothurOut(getHelpString()); }  
-       
-               
-private:
-
-       bool abort, filter, correction;
-       string fastafile, outputDir;
-       int processors, window, increment, numSeqs;
-       Chimera* chimera;
-       vector<string> outputNames;
-       vector<string> fastaFileNames;
-};
-
-/***********************************************************/
-
-#endif
-
-