created blank accnos in chimera commands if no seqs are deemed chimeric. modified...

[mothur.git] / chimerabellerophoncommand.cpp

diff --git a/chimerabellerophoncommand.cpp b/chimerabellerophoncommand.cpp
index d7f60e7901322b44d3548db5200bce9d723407e9..2a38438fdfb4e71b68ac007dde4221a152acd6cf 100644 (file)
--- a/chimerabellerophoncommand.cpp
+++ b/chimerabellerophoncommand.cpp
@@ -164,7 +164,6 @@ int ChimeraBellerophonCommand::execute(){
                                        
                        string outputFileName = outputDir + getRootName(getSimpleName(fastaFileNames[i])) +  "bellerophon.chimeras";
                        string accnosFileName = outputDir + getRootName(getSimpleName(fastaFileNames[i])) + "bellerophon.accnos";
-                       bool hasAccnos = true;
                        
                        chimera->getChimeras();
                        
@@ -206,13 +205,10 @@ int ChimeraBellerophonCommand::execute(){
                        
                        if (m->control_pressed) { remove(accnosFileName.c_str()); remove(outputFileName.c_str()); for (int i = 0; i < outputNames.size(); i++) {        remove(outputNames[i].c_str()); } delete chimera;       return 0;       }
                        
-                       //delete accnos file if its blank 
-                       if (isBlank(accnosFileName)) {  remove(accnosFileName.c_str());  hasAccnos = false; }
-                       
                        m->mothurOutEndLine(); m->mothurOut("It took " + toString(time(NULL) - start) + " secs to check " + toString(numSeqs) + " sequences."); m->mothurOutEndLine(); m->mothurOutEndLine();
                        
                        outputNames.push_back(outputFileName);
-                       if (hasAccnos) {  outputNames.push_back(accnosFileName);  }
+                       outputNames.push_back(accnosFileName);
                        
                        delete chimera;
                }