started adding chimeraslayer method and fixed minor bug in treegroupscommand deconstr...

[mothur.git] / chimera.h

diff --git a/chimera.h b/chimera.h
index 5df383ddcc56e62e853babb4f23e0978ce76d9c1..3efe0e4b63095042de78f3938118c7ab1d642656 100644 (file)
--- a/chimera.h
+++ b/chimera.h
@@ -71,6 +71,12 @@ class Chimera {
                virtual void setKmerSize(int k)                 {       kmerSize = k;           }
                virtual void setSVG(int s)                              {       svg = s;                        }
                virtual void setName(string n)                  {       name = n;                       }
+               virtual void setMatch(int m)                    {       match = m;                      }
+               virtual void setMisMatch(int m)                 {       misMatch = m;           }
+               virtual void setDivR(float d)                   {       divR = d;                       }
+               virtual void setParents(int p)                  {       parents = p;            }
+               virtual void setMinSim(int s)                   {       minSim = s;                     }
+
                
                virtual void setCons(string){};
                virtual void setQuantiles(string){};
@@ -88,7 +94,8 @@ class Chimera {
        protected:
                
                bool filter, correction, svg;
-               int processors, window, increment, numWanted, kmerSize;
+               int processors, window, increment, numWanted, kmerSize, match, misMatch, minSim, parents;
+               float divR;
                string seqMask, quanfile, filterString, name;