added sorted parameter to get.oturep, added error checking to chimera classes in...

[mothur.git] / chimera.h

diff --git a/chimera.h b/chimera.h
index 33e514b0f05d424740f2a660066e1ace6d99d40d..339f2c6b97c98fe9d0519250370a8c514ba7b700 100644 (file)
--- a/chimera.h
+++ b/chimera.h
@@ -89,12 +89,12 @@ class Chimera {
                
                
                //pure functions
-               virtual void getChimeras() = 0; 
+               virtual int getChimeras() = 0;  
                virtual void print(ostream&) = 0;       
                
        protected:
                
-               bool filter, correction, svg;
+               bool filter, correction, svg, unaligned;
                int processors, window, increment, numWanted, kmerSize, match, misMatch, minSim, parents, iters;
                float divR;
                string seqMask, quanfile, filterString, name;