added fontsize to heatmap.sim, paralellized chimera.slayer byGroup for all os's,...

[mothur.git] / chimera.h

diff --git a/chimera.h b/chimera.h
index 1df4d6b2122d88318193a74d906e601e9cd214a1..bb4c29ce04140df49c14cae6b4056da360da73e3 100644 (file)
--- a/chimera.h
+++ b/chimera.h
@@ -146,7 +146,7 @@ class Chimera {
 
        public:
        
-               Chimera(){ m = MothurOut::getInstance(); length = 0; unaligned = false;  }
+               Chimera(){ m = MothurOut::getInstance(); length = 0; unaligned = false;  byGroup = false; }
                virtual ~Chimera(){     for (int i = 0; i < templateSeqs.size(); i++) { delete templateSeqs[i];  } for (int i = 0; i < filteredTemplateSeqs.size(); i++) { delete filteredTemplateSeqs[i];  } };
                virtual bool getUnaligned()                             {       return unaligned;                       }
                virtual int getLength()                                 {   return length;      }
@@ -174,7 +174,7 @@ class Chimera {
                
                vector<Sequence*> templateSeqs;
                vector<Sequence*> filteredTemplateSeqs;
-               bool filter, unaligned; 
+               bool filter, unaligned, byGroup; 
                int length; 
                string seqMask, filterString, outputDir, templateFileName; 
                Sequence* getSequence(string);  //find sequence from name