finished chimera changes

[mothur.git] / chimera.h

diff --git a/chimera.h b/chimera.h
index f893d63ed9c57e7d53d84843cb3b647cc9dd89d6..8c00aecf720433bec4610968bc1c227bc93d5a03 100644 (file)
--- a/chimera.h
+++ b/chimera.h
@@ -92,7 +92,7 @@ class Chimera {
                Chimera(string);
                Chimera(string, bool, string);
                Chimera(string, string);
-               virtual ~Chimera(){};
+               virtual ~Chimera(){     for (int i = 0; i < templateSeqs.size(); i++) { delete templateSeqs[i];  } };
                virtual void setFilter(bool f)                  {       filter = f;                     }
                virtual void setCorrection(bool c)              {       correction = c;         }
                virtual void setProcessors(int p)               {       processors = p;         }
@@ -111,9 +111,8 @@ class Chimera {
                virtual void setMinBS(int b)                    {       minBS = b;                      }
                virtual void setMinSNP(int s)                   {       minSNP = s;                     }
                virtual void setIters(int i)                    {       iters = i;                      }
-               virtual void setTemplateSeqs(vector<Sequence*> t)       {       templateSeqs = t;       }
                virtual bool getUnaligned()                             {       return unaligned;                       }
-               virtual void setTemplateFile(string t)  {   templateFileName = t;       }
+               virtual void setTemplateFile(string t)  {   templateFileName = t;       templateSeqs = readSeqs(t);  }
                virtual int getLength()                                 {   return length;      }
                
                virtual void setCons(string){};