#include "chimera.h"
//***************************************************************************************************************
-//this is a vertical filter
+//this is a vertical soft filter
void Chimera::createFilter(vector<Sequence*> seqs) {
try {
}
}
+ //zero out spot where all sequences have blanks
//zero out spot where all sequences have blanks
int numColRemoved = 0;
for(int i = 0;i < seqs[0]->getAligned().length(); i++){
else if (((a[i] < threshold) && (t[i] < threshold) && (g[i] < threshold) && (c[i] < threshold))) { filterString[i] = '0'; numColRemoved++; }
//cout << "a = " << a[i] << " t = " << t[i] << " g = " << g[i] << " c = " << c[i] << endl;
}
+
//cout << "filter = " << filterString << endl;
mothurOut("Filter removed " + toString(numColRemoved) + " columns."); mothurOutEndLine();