working on slayer bug

[mothur.git] / chimera.cpp

diff --git a/chimera.cpp b/chimera.cpp
index ae9ad9a46ef1ce5634c867219904857731bf3d6e..54124872b7a5e87ce4aa545585fcb4b94c759044 100644 (file)
--- a/chimera.cpp
+++ b/chimera.cpp
@@ -186,6 +186,8 @@ vector<Sequence*> Chimera::readSeqs(string file) {
        
                m->mothurOut("Done."); m->mothurOutEndLine();
                
+               filterString = (string(container[0]->getAligned().length(), '1'));
+               
                return container;
        }
        catch(exception& e) {