continued work on chimeras and fixed bug in trim.seqs and reverse.seqs that was due...

[mothur.git] / ccode.cpp

diff --git a/ccode.cpp b/ccode.cpp
index ec2e355f882d86a60aba6f520604ef06ead6e6c8..0f1dd50aba5fec78ddd3aff3667533fcdef500b4 100644 (file)
--- a/ccode.cpp
+++ b/ccode.cpp
@@ -177,18 +177,8 @@ void Ccode::getChimeras() {
                                lines.push_back(new linePair((i*linesPerProcess), numSeqs));
                        }
                        
-                       //find breakup of templatefile for quantiles
-                       if (processors == 1) {   templateLines.push_back(new linePair(0, templateSeqs.size()));  }
-                       else { 
-                               for (int i = 0; i < processors; i++) {
-                                       templateLines.push_back(new linePair());
-                                       templateLines[i]->start = int (sqrt(float(i)/float(processors)) * templateSeqs.size());
-                                       templateLines[i]->end = int (sqrt(float(i+1)/float(processors)) * templateSeqs.size());
-                               }
-                       }
                #else
                        lines.push_back(new linePair(0, numSeqs));
-                       templateLines.push_back(new linePair(0, templateSeqs.size()));
                #endif
        
                distCalc = new eachGapDist();
@@ -305,7 +295,6 @@ void Ccode::getChimeras() {
                
                //free memory
                for (int i = 0; i < lines.size(); i++)                                  {       delete lines[i];                                }
-               for (int i = 0; i < templateLines.size(); i++)                  {       delete templateLines[i];                }
                delete distCalc;
                delete decalc;