fixed some bugs found while testing 1.8

[mothur.git] / ccode.cpp

diff --git a/ccode.cpp b/ccode.cpp
index a86e0fda553c664d8175c524ef1f272f9e7de547..c474d7a0ad7cb54729f809cf9921ed234f48d5db 100644 (file)
--- a/ccode.cpp
+++ b/ccode.cpp
@@ -13,7 +13,7 @@
 
 
 //***************************************************************************************************************
-Ccode::Ccode(string filename, string temp) {  fastafile = filename;  templateFile = temp;  }
+Ccode::Ccode(string filename, string temp, string o) {  fastafile = filename;  templateFile = temp;  outputDir = o; }
 //***************************************************************************************************************
 
 Ccode::~Ccode() {
@@ -32,7 +32,7 @@ void Ccode::print(ostream& out) {
                
                mothurOutEndLine();
                
-               string mapInfo = getRootName(fastafile) + "mapinfo";
+               string mapInfo = outputDir + getRootName(getSimpleName(fastafile)) + "mapinfo";
                ofstream out2;
                openOutputFile(mapInfo, out2);