added warning about merging with something above cutoff to cluster. working on chimeras

[mothur.git] / ccode.cpp

diff --git a/ccode.cpp b/ccode.cpp
index 326af7cec61a88eb6ab859f203098c0ded3a9cfb..28e9723f6c19984b3e6cb9dbcfc869c0d75d6ffe 100644 (file)
--- a/ccode.cpp
+++ b/ccode.cpp
@@ -35,7 +35,7 @@ void Ccode::printHeader(ostream& out) {
        out << "For full window mapping info refer to " << mapInfo << endl << endl;
 }
 //***************************************************************************************************************
-void Ccode::print(ostream& out) {
+void Ccode::print(ostream& out, ostream& outAcc) {
        try {
                
                mothurOutEndLine();
@@ -112,6 +112,7 @@ void Ccode::print(ostream& out) {
                        
                if (results) {
                        mothurOut(querySeq->getName() + " was found have at least one chimeric window."); mothurOutEndLine();
+                       outAcc << querySeq->getName() << endl;
                }
 
                //free memory