changes while testing

[mothur.git] / catchallcommand.h

diff --git a/catchallcommand.h b/catchallcommand.h
index d32989bea50e014c800b84c0de35e72b6e5c859b..32be8b63d2ce751391ae5ebbc6154be221b77c9d 100644 (file)
--- a/catchallcommand.h
+++ b/catchallcommand.h
@@ -31,9 +31,12 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "catchall";                    }
        string getCommandCategory()             { return "OTU-Based Approaches";        }
+       
        string getHelpString(); 
-       string getCitation() { return "Bunge, J. (2011). Estimating the number of species with CatchAll. Forthcoming in Proceedings of the Pacific Symposium on Biocomputing 2011.\nhttp://www.northeastern.edu/catchall/index.html http://www.mothur.org/wiki/Catchall"; }
-
+    string getOutputPattern(string);   
+       string getCitation() { return "Bunge J, Woodard L, Bohning D, Foster JA, Connolly S, Allen HK (2012). Estimating population diversity with CatchAll. Bioinformatics  28:1045.\nhttp://www.northeastern.edu/catchall/index.html\nhttp://www.mothur.org/wiki/Catchall"; }
+       string getDescription()         { return "estimate number of species"; }
+       
        int execute(); 
        void help() { m->mothurOut(getHelpString()); }