fixed catchall hangup if it can't find the exe

[mothur.git] / catchallcommand.cpp

diff --git a/catchallcommand.cpp b/catchallcommand.cpp
index 69b9f04becdbb492fc69209837be5a0581123b99..b0e5eff6652a9defaa887eb7d21bb9bfe9e372a6 100644 (file)
--- a/catchallcommand.cpp
+++ b/catchallcommand.cpp
@@ -500,8 +500,10 @@ int CatchAllCommand::createSummaryFile(string file1, string label, ofstream& out
        try {
                
                ifstream in;
-               m->openInputFile(file1, in);
+               int able = m->openInputFile(file1, in, "noerror");
                
+               if (able == 1) {  m->mothurOut("[ERROR]: the catchall program did not run properly. Please check to make sure it is located in the same folder as your mothur executable.");m->mothurOutEndLine();  m->control_pressed = true; return 0; }
+                       
                if (!in.eof()) {
                        
                        string header = m->getline(in); m->gobble(in);