fixed the bug that caused mothur to choke on other commands after running catchall...

[mothur.git] / catchallcommand.cpp

diff --git a/catchallcommand.cpp b/catchallcommand.cpp
index b0ab7c8314ac7e1a5b267b02bf2ccad559b62355..66fbf9afd2b368d678d5fc99bb55bcc71d2c1f68 100644 (file)
--- a/catchallcommand.cpp
+++ b/catchallcommand.cpp
@@ -382,6 +382,8 @@ int CatchAllCommand::execute() {
                        }
                        string summaryfilename = combineSummmary(sumNames);
                        outputNames.push_back(summaryfilename); outputTypes["summary"].push_back(summaryfilename);
+                       
+                       globaldata->setSharedFile(sharedfile); globaldata->setFormat("sharedfile");
                }
                
                m->mothurOutEndLine();