moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / canberra.cpp

diff --git a/canberra.cpp b/canberra.cpp
deleted file mode 100644 (file)
index 9ab6234..0000000
--- a/canberra.cpp
+++ /dev/null
@@ -1,47 +0,0 @@
-/*
- *  canberra.cpp
- *  Mothur
- *
- *  Created by westcott on 12/14/10.
- *  Copyright 2010 Schloss Lab. All rights reserved.
- *
- */
-
-#include "canberra.h"
-
-/***********************************************************************/
-
-EstOutput Canberra::getValues(vector<SharedRAbundVector*> shared) {
-       try {
-               data.resize(1,0);
-               
-               int numSharedOTUS = 0;
-               
-               double sum = 0.0;
-               
-               for (int i = 0; i < shared[0]->getNumBins(); i++) { 
-                       
-                       int Aij = shared[0]->getAbundance(i);
-                       int Bij = shared[1]->getAbundance(i);
-                       
-                       //is this otu shared
-                       if ((Aij != 0) && (Bij != 0)) { numSharedOTUS++; }
-                       
-                       if ((Aij + Bij) != 0) { 
-                               sum += ((abs(Aij - Bij)) / (float) (Aij + Bij));
-                       }
-               }
-               
-               data[0] = (1 / (float) shared[0]->getNumBins()) * sum;
-               
-               if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; }
-               
-               return data;
-       }
-       catch(exception& e) {
-               m->errorOut(e, "Canberra", "getValues");
-               exit(1);
-       }
-}
-
-/***********************************************************************/