added logfile feature

[mothur.git] / bstick.cpp

diff --git a/bstick.cpp b/bstick.cpp
index c3ff58fc7a12dbe5c7650acc3a095ee6c4cf3111..566099772e8cecc3d230dbb033aa1bebed1ab885 100644 (file)
--- a/bstick.cpp
+++ b/bstick.cpp
@@ -67,8 +67,8 @@ EstOutput BStick::getValues(SAbundVector* rank){
                data[1] = 0.886/sqrt(rdata.size());
                data[2] = 1.031/sqrt(rdata.size());
 
-               /*cout << critVal << "\n";
-               cout << "If D-Statistic is less than the critical value then the data fits the Broken Stick model w/ 95% confidence.\n\n";*/
+               /*mothurOut(critVal); mothurOutEndLine();
+               mothurOut("If D-Statistic is less than the critical value then the data fits the Broken Stick model w/ 95% confidence.\n\n");*/
                
 
                if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; }
@@ -78,13 +78,9 @@ EstOutput BStick::getValues(SAbundVector* rank){
                return data;
        }
        catch(exception& e) {
-               cout << "Standard Error: " << e.what() << " has occurred in the BStick class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+               errorOut(e, "BStick", "getValues");
                exit(1);
        }
-       catch(...) {
-               cout << "An unknown error has occurred in the BStick class function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-               exit(1);
-       }       
 }
 
 /***********************************************************************/