changed random forest output filename

[mothur.git] / blastdb.hpp

diff --git a/blastdb.hpp b/blastdb.hpp
index 0c3ac4b4ef1d7c49e98d3b79d5b2e40f1a1fe9bb..50a8379b68ec89130b7df1892aab4538daa77a1e 100644 (file)
--- a/blastdb.hpp
+++ b/blastdb.hpp
@@ -16,10 +16,8 @@
 class BlastDB : public Database {
 
 public:
-       BlastDB(string, float, float, float, float, string);
-       BlastDB(string);
-       BlastDB(const BlastDB& bdb) : dbFileName(bdb.dbFileName), queryFileName(bdb.queryFileName), blastFileName(bdb.blastFileName), path(bdb.path),
-                                                                       count(bdb.count), gapOpen(bdb.gapOpen), gapExtend(bdb.gapExtend), match(bdb.match), misMatch(bdb.misMatch), Database(bdb) {}
+       BlastDB(string, float, float, float, float, string, int);
+       BlastDB(string, int);
        ~BlastDB();
        
        void generateDB();
@@ -28,12 +26,15 @@ public:
        vector<int> findClosestMegaBlast(Sequence*, int, int);
        
 private:
+       
+       string scrubName(string);
+       
        string dbFileName;
        string queryFileName;
        string blastFileName;
        string path;
        
-       int count;
+       int count, threadID;
        float gapOpen;
        float gapExtend;
        float match;