moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / blastdb.hpp

diff --git a/blastdb.hpp b/blastdb.hpp
deleted file mode 100644 (file)
index 50a8379..0000000
--- a/blastdb.hpp
+++ /dev/null
@@ -1,45 +0,0 @@
-#ifndef BLASTDB_HPP
-#define BLASTDB_HPP
-
-
-/*
- *  blastdb.hpp
- *  
- *
- *  Created by Pat Schloss on 12/22/08.
- *  Copyright 2008 Patrick D. Schloss. All rights reserved.
- *
- */
-
-#include "mothur.h"
-
-class BlastDB : public Database {
-
-public:
-       BlastDB(string, float, float, float, float, string, int);
-       BlastDB(string, int);
-       ~BlastDB();
-       
-       void generateDB();
-       void addSequence(Sequence);
-       vector<int> findClosestSequences(Sequence*, int);
-       vector<int> findClosestMegaBlast(Sequence*, int, int);
-       
-private:
-       
-       string scrubName(string);
-       
-       string dbFileName;
-       string queryFileName;
-       string blastFileName;
-       string path;
-       
-       int count, threadID;
-       float gapOpen;
-       float gapExtend;
-       float match;
-       float misMatch;
-       
-};
-
-#endif