changes while testing

[mothur.git] / blastalign.hpp

diff --git a/blastalign.hpp b/blastalign.hpp
index 696c134375785698c1c15649fef4adc2df783a4a..31688bd86d77386d384fef73bb9c3289e681ada3 100644 (file)
--- a/blastalign.hpp
+++ b/blastalign.hpp
@@ -1,3 +1,7 @@
+#ifndef BlastAlignment_H
+#define BlastAlignment_H
+
+
 /*
  *  blastalign.hpp
  *  
@@ -12,7 +16,7 @@
  */
  
 #include "mothur.h"
-#include "globaldata.hpp"
+
 
 class BlastAlignment : public Alignment {
 
@@ -20,6 +24,8 @@ public:
        BlastAlignment(float, float, float, float);
        ~BlastAlignment();
        void align(string, string);
+       void setMatrix(int){};
+       
 private:
 
        string candidateFileName;
@@ -32,6 +38,9 @@ private:
        float mismatch;
        float gapOpen;
        float gapExtend;
-       GlobalData* globaldata;
 };
 
+#endif
+
+
+