changes while testing

[mothur.git] / blastalign.hpp

diff --git a/blastalign.hpp b/blastalign.hpp
index 0f755d852cb0fdb793c40e88613dd8b19076c991..31688bd86d77386d384fef73bb9c3289e681ada3 100644 (file)
--- a/blastalign.hpp
+++ b/blastalign.hpp
@@ -1,3 +1,7 @@
+#ifndef BlastAlignment_H
+#define BlastAlignment_H
+
+
 /*
  *  blastalign.hpp
  *  
@@ -13,17 +17,21 @@
  
 #include "mothur.h"
 
+
 class BlastAlignment : public Alignment {
 
 public:
        BlastAlignment(float, float, float, float);
        ~BlastAlignment();
        void align(string, string);
+       void setMatrix(int){};
+       
 private:
 
        string candidateFileName;
        string templateFileName;
        string blastFileName;
+       string path;
 
        void setPairwiseSeqs();
        float match;
@@ -32,3 +40,7 @@ private:
        float gapExtend;
 };
 
+#endif
+
+
+