moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / blastalign.hpp

diff --git a/blastalign.hpp b/blastalign.hpp
deleted file mode 100644 (file)
index 31688bd..0000000
--- a/blastalign.hpp
+++ /dev/null
@@ -1,46 +0,0 @@
-#ifndef BlastAlignment_H
-#define BlastAlignment_H
-
-
-/*
- *  blastalign.hpp
- *  
- *
- *  Created by Pat Schloss on 12/16/08.
- *  Copyright 2008 Patrick D. Schloss. All rights reserved.
- *
- *     This is a basic alignment method that gets the blast program to do the heavy lifting.  In the future, we should
- *     probably incorporate NCBI's library so that we don't have to call on a user-supplied executable.  This is a child
- *     of the Alignment class, which requires a constructor and align method.
- *
- */
- 
-#include "mothur.h"
-
-
-class BlastAlignment : public Alignment {
-
-public:
-       BlastAlignment(float, float, float, float);
-       ~BlastAlignment();
-       void align(string, string);
-       void setMatrix(int){};
-       
-private:
-
-       string candidateFileName;
-       string templateFileName;
-       string blastFileName;
-       string path;
-
-       void setPairwiseSeqs();
-       float match;
-       float mismatch;
-       float gapOpen;
-       float gapExtend;
-};
-
-#endif
-
-
-