added stricter compilation requirements and fixed resulting errors

[mothur.git] / blastalign.cpp

diff --git a/blastalign.cpp b/blastalign.cpp
index 0645fb031f0d2a4e98b4caba5695f30ecd555474..624210f5f977ac505a32119e574561ec7e92dcc2 100644 (file)
--- a/blastalign.cpp
+++ b/blastalign.cpp
@@ -82,13 +82,13 @@ void BlastAlignment::setPairwiseSeqs(){     //      This method call assigns the blast ge
        
        string candidateName, templateName;
        
-       while(d=blastFile.get() != '='){}
+       while((d=blastFile.get()) != '='){}
        blastFile >> candidateName;                                     //      Get the candidate sequence name from flatfile
        
-       while(d=blastFile.get() != '('){}
+       while((d=blastFile.get()) != '('){}
        blastFile >> candidateLength;                           //      Get the candidate sequence length from flatfile
        
-       while(d=blastFile.get()){
+       while((d=blastFile.get())){
                if(d == '>'){
                        blastFile >> templateName;                      //      Get the template sequence name from flatfile
                        break;
@@ -114,10 +114,10 @@ void BlastAlignment::setPairwiseSeqs(){   //      This method call assigns the blast ge
                }
        }
        
-       while(d=blastFile.get() != '='){}
+       while((d=blastFile.get()) != '='){}
        blastFile >> templateLength;                            //      Get the template sequence length from flatfile
                
-       while(d=blastFile.get() != 'Q'){}                       //      Suck up everything else until we get to the start of the alignment
+       while((d=blastFile.get()) != 'Q'){}                     //      Suck up everything else until we get to the start of the alignment
        int queryStart, sbjctStart, queryEnd, sbjctEnd;
        string queryLabel, sbjctLabel, query, sbjct;
 
@@ -127,7 +127,7 @@ void BlastAlignment::setPairwiseSeqs(){     //      This method call assigns the blast ge
        while(queryLabel == "Query:"){
                blastFile >> queryStart >> query >> queryEnd;
                
-               while(d=blastFile.get() != 'S'){};
+               while((d=blastFile.get()) != 'S'){};
                
                blastFile >> sbjctLabel >> sbjctStart >> sbjct >> sbjctEnd;