moved utilities out of mothur.h and into mothurOut class.

[mothur.git] / blastalign.cpp

diff --git a/blastalign.cpp b/blastalign.cpp
index 04c7716de2958ec69353a53c0d737f8ae9cfe9dd..5e7fb61aa77e7c34ca7367393766b1a5455c9213 100644 (file)
--- a/blastalign.cpp
+++ b/blastalign.cpp
@@ -72,7 +72,7 @@ void BlastAlignment::setPairwiseSeqs(){       //      This method call assigns the blast ge
                                                                                                                        //      to the pairwise entry in the Sequence class for the 
                                                                                                                        //      candidate and template Sequence objects
        ifstream blastFile;
-       openInputFile(blastFileName, blastFile);
+       m->openInputFile(blastFileName, blastFile);
        
        seqAaln = "";
        seqBaln = "";