*
*/
-using namespace std;
#include "alignment.hpp"
#include "blastalign.hpp"
string candidateName, templateName;
- while(d=blastFile.get() != '='){};
+ while(d=blastFile.get() != '='){}
blastFile >> candidateName; // Get the candidate sequence name from flatfile
- while(d=blastFile.get() != '('){};
+ while(d=blastFile.get() != '('){}
blastFile >> candidateLength; // Get the candidate sequence length from flatfile
while(d=blastFile.get()){
}
}
- while(d=blastFile.get() != '='){};
+ while(d=blastFile.get() != '='){}
blastFile >> templateLength; // Get the template sequence length from flatfile
- while(d=blastFile.get() != 'Q'){}; // Suck up everything else until we get to the start of the alignment
+ while(d=blastFile.get() != 'Q'){} // Suck up everything else until we get to the start of the alignment
int queryStart, sbjctStart, queryEnd, sbjctEnd;
string queryLabel, sbjctLabel, query, sbjct;