fixed memory leak in parsimony calculator and added progress bars to parsimony and...

[mothur.git] / binsequencecommand.h

diff --git a/binsequencecommand.h b/binsequencecommand.h
new file mode 100644 (file)
index 0000000..22847dc
--- /dev/null
+++ b/binsequencecommand.h
@@ -0,0 +1,42 @@
+#ifndef BINSEQCOMMAND_H
+#define BINSEQCOMMAND_H
+/*
+ *  binsequencecommand.h
+ *  Mothur
+ *
+ *  Created by Sarah Westcott on 4/3/09.
+ *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
+ *
+ */
+
+
+#include "command.hpp"
+#include "inputdata.h"
+#include "listvector.hpp"
+#include "readmatrix.hpp"
+#include "fastamap.h"
+
+
+class GlobalData;
+
+class BinSeqCommand : public Command {
+       
+public:
+       BinSeqCommand();        
+       ~BinSeqCommand();
+       int execute();  
+       
+private:
+       GlobalData* globaldata;
+       ListVector* list;
+       ReadMatrix* read;
+       InputData* input;
+       FastaMap* fasta;
+       string filename, fastafile, namesfile;
+       ofstream out;
+       ifstream in, inNames;
+       
+       void readNamesFile();
+};
+
+#endif