bugs fixes while testing for 1.5 release

[mothur.git] / binsequencecommand.cpp

diff --git a/binsequencecommand.cpp b/binsequencecommand.cpp
index 88057379be6f400e656b73f5a9c85d4f52a32a22..e1f98eb94a02b6ef39073270e5c0d09f55e69025 100644 (file)
--- a/binsequencecommand.cpp
+++ b/binsequencecommand.cpp
@@ -170,7 +170,7 @@ int BinSeqCommand::execute(){
                        
                        if(allLines == 1 || lines.count(count) == 1 || labels.count(list->getLabel()) == 1){
                                
-                               error = process(list, count);   
+                               error = process(list);  
                                if (error == 1) { return 0; }   
                                                        
                                processedLabels.insert(list->getLabel());
@@ -182,7 +182,7 @@ int BinSeqCommand::execute(){
                                delete list;
                                list = input->getListVector(lastLabel);
                                
-                               error = process(list, count);   
+                               error = process(list);  
                                if (error == 1) { return 0; }
                                                                                                        
                                processedLabels.insert(list->getLabel());
@@ -216,7 +216,7 @@ int BinSeqCommand::execute(){
                        delete list;
                        list = input->getListVector(lastLabel);
                                
-                       error = process(list, count);   
+                       error = process(list);  
                        if (error == 1) { return 0; }
                        
                        delete list;  
@@ -265,13 +265,13 @@ void BinSeqCommand::readNamesFile() {
 }
 //**********************************************************************************************************************
 //return 1 if error, 0 otherwise
-int BinSeqCommand::process(ListVector* list, int count) {
+int BinSeqCommand::process(ListVector* list) {
        try {
                                string binnames, name, sequence;
                                string outputFileName = getRootName(globaldata->getListFile()) + list->getLabel() + ".fasta";
                                openOutputFile(outputFileName, out);
 
-                               mothurOut(list->getLabel() + "\t" + toString(count)); mothurOutEndLine();
+                               mothurOut(list->getLabel()); mothurOutEndLine();
                                
                                //for each bin in the list vector
                                for (int i = 0; i < list->size(); i++) {