fixes while testing

[mothur.git] / binsequencecommand.cpp

diff --git a/binsequencecommand.cpp b/binsequencecommand.cpp
index a1c965bb8052bab0d2ad086e8f57622ae5abfbc0..bf14d6b07b3b6ae64c20d3072abb3c3603a9e42c 100644 (file)
--- a/binsequencecommand.cpp
+++ b/binsequencecommand.cpp
@@ -48,6 +48,7 @@ vector<string> BinSeqCommand::getRequiredFiles(){
 //**********************************************************************************************************************
 BinSeqCommand::BinSeqCommand(){        
        try {
+               abort = true;
                //initialize outputTypes
                vector<string> tempOutNames;
                outputTypes["fasta"] = tempOutNames;