added warning about merging with something above cutoff to cluster. working on chimeras

[mothur.git] / bellerophon.cpp

diff --git a/bellerophon.cpp b/bellerophon.cpp
index afb88d2ea29e7b59e971fb6cee9c95f8ffd6e475..17859dc710309b7535e234aec56791bc7a8ee1b2 100644 (file)
--- a/bellerophon.cpp
+++ b/bellerophon.cpp
@@ -27,7 +27,7 @@ Bellerophon::Bellerophon(string name, string o)  {
 }
 
 //***************************************************************************************************************
-void Bellerophon::print(ostream& out) {
+void Bellerophon::print(ostream& out, ostream& outAcc) {
        try {
                int above1 = 0;
                out << "Name\tScore\tLeft\tRight\t" << endl;
@@ -38,6 +38,7 @@ void Bellerophon::print(ostream& out) {
                        //calc # of seqs with preference above 1.0
                        if (pref[i].score[0] > 1.0) { 
                                above1++; 
+                               outAcc << pref[i].name << endl;
                                mothurOut(pref[i].name + " is a suspected chimera at breakpoint " + toString(pref[i].midpoint)); mothurOutEndLine();
                                mothurOut("It's score is " + toString(pref[i].score[0]) + " with suspected left parent " + pref[i].leftParent[0] + " and right parent " + pref[i].rightParent[0]); mothurOutEndLine();
                        }