1.10.0

[mothur.git] / bayesian.h

diff --git a/bayesian.h b/bayesian.h
index 7100bf33b00c3fa85bd0c928c00daf82647f851a..fa6590ab98a393d5d4907102db4401704071e5f9 100644 (file)
--- a/bayesian.h
+++ b/bayesian.h
@@ -19,16 +19,11 @@ class Bayesian : public Classify {
        
 public:
        Bayesian(string, string, string, int, int, int);
-       ~Bayesian() {};
+       ~Bayesian();
        
        string getTaxonomy(Sequence*);
-       //map<string, int> getConfidenceScores() { return taxConfidenceScore; }
        
 private:
-       //map<string, vector<double> > taxonomyProbability;     //probability of a word being in a given taxonomy. 
-                                                                                                       //taxonomyProbability[bacteria;][0] = probabtility that a sequence within bacteria; would contain kmer 0;
-                                                                                                       //taxonomyProbability[bacteria;][1] = probabtility that a sequence within bacteria; would contain kmer 1...
-       
        vector< vector<float> > wordGenusProb;  //vector of maps from genus to probability
                                                                                                //wordGenusProb[0][392] = probability that a sequence within genus that's index in the tree is 392 would contain kmer 0;
        
@@ -39,8 +34,7 @@ private:
        
        string bootstrapResults(vector<int>, int, int);
        int getMostProbableTaxonomy(vector<int>);
-       void readProbFile(ifstream&, ifstream&);
-       //map<string, int> parseTaxMap(string);
+       void readProbFile(ifstream&, ifstream&, string, string);
        
 };