added pca command

[mothur.git] / bayesian.h

diff --git a/bayesian.h b/bayesian.h
index 0020962f4276c9deb2129a27b2d69974783aab82..7100bf33b00c3fa85bd0c928c00daf82647f851a 100644 (file)
--- a/bayesian.h
+++ b/bayesian.h
@@ -18,7 +18,7 @@
 class Bayesian : public Classify {
        
 public:
-       Bayesian(string, string, string, int, int, bool);
+       Bayesian(string, string, string, int, int, int);
        ~Bayesian() {};
        
        string getTaxonomy(Sequence*);
@@ -35,8 +35,7 @@ private:
        vector<int> genusTotals;
        vector<int> genusNodes;  //indexes in phyloTree where genus' are located
        
-       int kmerSize, numKmers, confidenceThreshold;
-       bool probs;
+       int kmerSize, numKmers, confidenceThreshold, iters;
        
        string bootstrapResults(vector<int>, int, int);
        int getMostProbableTaxonomy(vector<int>);