worked on hcluster. made .single command run using a sharedfile. and various other...

[mothur.git] / bayesian.h

diff --git a/bayesian.h b/bayesian.h
index 7100bf33b00c3fa85bd0c928c00daf82647f851a..6e35e9f8bd485734962e55a140f2dbb134cc8110 100644 (file)
--- a/bayesian.h
+++ b/bayesian.h
@@ -22,13 +22,8 @@ public:
        ~Bayesian() {};
        
        string getTaxonomy(Sequence*);
-       //map<string, int> getConfidenceScores() { return taxConfidenceScore; }
        
 private:
-       //map<string, vector<double> > taxonomyProbability;     //probability of a word being in a given taxonomy. 
-                                                                                                       //taxonomyProbability[bacteria;][0] = probabtility that a sequence within bacteria; would contain kmer 0;
-                                                                                                       //taxonomyProbability[bacteria;][1] = probabtility that a sequence within bacteria; would contain kmer 1...
-       
        vector< vector<float> > wordGenusProb;  //vector of maps from genus to probability
                                                                                                //wordGenusProb[0][392] = probability that a sequence within genus that's index in the tree is 392 would contain kmer 0;
        
@@ -40,7 +35,6 @@ private:
        string bootstrapResults(vector<int>, int, int);
        int getMostProbableTaxonomy(vector<int>);
        void readProbFile(ifstream&, ifstream&);
-       //map<string, int> parseTaxMap(string);
        
 };